HomePUP Journal of Science and Technologyvol. 12 no. 1 (2019)

BIOREMEDIATION ACTIVITY OF ISOLATED CHROMIUM-RESISTANT BACTERIA FROM ESTUARY SEDIMENTS IN LA UNION, PHILIPPINES

DIVINE CLAIRE F. LORIDO | OLIVIENNE NOELLE P. GINES | ROSEMARY M. GUTIERREZ

Discipline: microbiology and cell science

 

Abstract:

Chromium contamination in sediments is contributed by industrialization. Elevated levels of Cr(VI) have crucial effects on living organisms' health and are detrimental to the environment. Bioremediation is an innovative and sustainable way of reducing hazardous substances to lesser ones. In this study, Cr-resistant bacteria were isolated from Maragayap Estuary sediments and its bioremediation activity was assessed. Soil samples were collected from the study site and were serially diluted and grown in Luria-Bertani (LB) medium. Soil microcosm was amended with 60 ppm Cr(VI) and its heavy metal levels were evaluated in four weeks through US EPA 3060A and 7196A. Bacterial isolates were characterized and identified by 16s rRNA gene sequencing and their phylogenetic trees were constructed. Based on heavy metal analyses, Maragayap Estuary was found to be polluted with chromium. Isolates, designated as LG-01 and LG-03, were identified as Staphylococcus sciuri and Bacillus cereus, and LG-02 as the novel bacteria, Bacillus aerius. It was observed that all isolates can tolerate up to 300 ppm of chromium. The two Bacillus species produced putative carotenoids due to heavy metal stress. Results revealed that there was a reduction of Cr(VI), as bioremediation time progresses. The bacterial consortium reduced chromium faster than pure cultures at a rate of 0.8931 ppm/week. Individually, S. sciuri had the highest reduction of 1.65 ppm in four weeks. The results of this study may inform the community on possible human pathogens thriving in estuaries and may provide a possible microbial source of bioremediation agent to address environmental concerns in the freshwater ecosystem.



References:

  1. Aanniz, T., Ouadghiri, M., Melloul, M., Swings, J., Elfahime, E., Ibijbijen, J., & Amar, M. (2015). Thermophilic bacteria in Moroccan hot springs, salt marshes, and desert soils. Brazilian Journal of Microbiology, 46(2), 443–453.
  2. Abdul, M., Mondol, M., Shin, H.J., & Islam, M.T. (2013). Diversity of secondary metabolites from marine Bacillus species: chemistry and biological activity. Marine Drugs, 11, 2846–2872.
  3. Ananthanarayanan, L., & Dubhashi, A. (2016). Study of probiotic attributes of two isolates Bacillus aerius and Bacillus cereus. International Journal of Research Studies in Biosciences, 4(4), 34–39.
  4. Agency for Toxic Substances and Disease Registry. (2016). Priority list of hazardous substances. In Agency for Toxic Substances and Disease Registry. Retrieved September 29, 2016.
  5. Ansari, T.T. Marr, I.L. & Tariq, L. (2004). Heavy metals in marine pollution perspective– A Mini Review. Journal of Applied Sciences, 4: 1-20.
  6. Bahafid, W., Joutey, N.T., Sayel, H., Boularab, I., & El Ghachtouli, N. (2013). Bioaugmentation of chromium-polluted soil microcosms with Candida tropicalis diminishes phytoavailable chromium. Journal of Applied Microbiology, 115(3), 727– 734.
  7. Batool, R., Yrjälä, K., & Hasnain, S. (2014). Impact of environmental stress on biochemical parameters of bacteria reducing chromium. Brazilian Journal of Microbiology, 45(2), 573–583.
  8. Baranska, M., & Kaczor, A. (2016). Carotenoids: Nutrition, Analysis and Technology. Chichester, West Sussex, United Kingdom: John Wiley & Sons Inc.
  9. Branco, R., Chung, A.P., Verissimo, A., & Morais, P.V. (2005). Impact of chromium contaminated wastewaters on the microbial community of a river. FEMS Microbiology Ecology. 54, 35-46.
  10. Caeiro, S., Costa, M., Ramos, T., Fernandes, F., Silveira, N., Coimbra, A., … & Painho, M. (2005). Assessing heavy metal contamination in Sado estuary sediment: An index analysis approach. Ecological Indicators, 5(2), 151-169.
  11. Camargo, A.O., & Okeke, B.C. (2005). Diversity of chromium-resistant bacteria isolated from soils contaminated with dichromate. Applied Soil Ecology, 29, 193-02.
  12. Cervantes, C., Campos-Garcia, J., Devars, S., Gutierrez-Corona, F., LozaTavera, H., Torres-Guzman, J.C., & Moreno-Sanchez, R. (2000). Interactions of chromium with microorganisms and plants. FEMS Microbiology Reviews, 25, 335-347.
  13. Chai, L., Huang, S., Yang, Z., Peng, B., Huang, Y., & Chen, Y. (2009). Cr(VI) remediation by indigenous bacteria in soils contaminated by chromium-containing slag. Journal of Hazardous Materials, 167(1–3), 516–522.
  14. Chantarasiri, A. (2016). Aquatic Bacillus cereus JD0404 isolated from the muddy sediments of mangrove swamps in Thailand and characterization of its cellulolytic activity. The Egyptian Journal of Aquatic Research, 41(3), 257–264.
  15. Chrysochoou, M., Zhang, X., & Amador, J.A. (2013). Aerobic Cr(VI) Reduction by bacteria in culture and soil conditions. Soil and Sediment Contamination, 22(3), 273– 287.
  16. De Guzman, M.L., Arcega, K.S.G., Cabigao, J.M.N.R., & Su, G.L.S. (2016). Isolation and identification of heavy metal tolerant bacteria from an industrial site as a possible source for bioremediation of Cadmium, Lead and Nickel. Advances in Environmental Biology, 10(1), 10–15.
  17. Duc, L.H., Fraser, P.D., Tam, N.K.M., & Cutting, S.M. (2006). Carotenoids present in halotolerant Bacillus spore formers. FEMS Microbiology Letters, 255, 215–224.
  18. Ferreira, J.G., Bricker, S.B., & Simas, T.C. (2007). Application and sensitivity testing of an eutrophication assessment method on coastal systems in the United States and European Union. Journal of Environmental Management. 82:433-445.
  19. Fong, N.J.C., Burgess, M.L., Barrow, K.D., & Glenn, D.R. (2001). Carotenoid accumulation in the psychrotrophic bacterium Arthrobacter agilis in response to thermal and salt stress. Applied Microbiology Biotechnology, 56, 750–756.
  20. Gadd, G, M. (1990). Heavy metal accumulation by bacteria and other microorganisms. Experientia., 46, 834–840.
  21. Ghaderpour, A., Nazrin, K., Nasori, M., Lee, L., & Ching, V. (2014). Detection of multiple potentially pathogenic bacteria in Matang mangrove estuaries, Malaysia. Marine Pollution Bulletin, 83(1), 324–330.
  22. Ghalib, A.K., Yasin, M., & Faisal, M. (2014). Characterization and metal detoxification potential of moderately thermophilic Bacillus cereus from geothermal springs of Himalaya. Brazilian Archives of Biology and Technology, 57(4), 554-560.
  23. Gmelin, L. (1849). Hand-book of chemistry, vol. III, Metals, translated from the German by H. Watts, Cavendish Society, London.
  24. Gonzalez, P.S., Ambrosio, L.F., Paisio, C.E., et al. (2014). Chromium(VI) remediation by a native strain: effect of environmental conditions and removal mechanisms involved. Environmental Science and Pollution Research, 21, 13551-13559
  25. Granum, P., & Lund, T. (1997). Bacillus cereus and its food poisoning toxins. FEMS Microbiol Lett, 157(2), 223-228.
  26. Jalal, K.C.A., Najiah, M., Fathiyah, M., Kamaruzzaman, Y., Omar, M.N., Amin, S.M.N., & Jaswir, I. (2009). Bacterial pollution in molluscs arch clam, Orbicularia orbiculata and blood cockle, Anadara granosa of Pahang estuary, Malaysia. Journal of Biological Sciences, 9(8), 841–850.
  27. Jhala, Y.K., Vyas, R.V., Shelat, H. N., Patel, H.K., Patel, H.K., & Patel, K.T. (2014). Isolation and characterization of methane utilizing bacteria from wetland paddy ecosystem. World Journal of Microbiology and Biotechnology, 30(6), 1845–1860.
  28. Joutey, N.T., Sayel, H., Bahafid, W., & El Ghachtouli, N. (2015). Mechanisms of hexavalent chromium resistance and removal by microorganisms. Reviews of Environmental Contamination and Toxicology, 233, 45-68
  29. KalwasiƄska, A., Kesy, J., Donderski, W., & Lalke-Porczyk, E. (2008). Biodegradation of carbendazim by planktonic and benthic bacteria of eutrophic lake Chelmzynskie. Polish Journal of Environmental Studies, 17(4), 515–523.
  30. Kamaludeen, S.P.B., Arunkumar, K.R., Avudainayagam, S., & Ramasamy, K. (2003). Bioremediation of chromium contaminated environments. Indian Journal of Experimental Biology., 41, 972-985.
  31. Kirti, K., Amita, S., Priti, S., Kumar, A.M., & Jyoti, S. (2014). Colorful world of microbes : carotenoids and their applications. Advances in Biology, 2014.
  32. Kloos, W.E., Schleifer, K.H., & Smith, R.F. (1976). Characterization of Staphylococcus sciuri sp. nov. and its subspecies. International Journal of Systematic Bacteriology, 26(1), 22–37.
  33. Kouadjo, C.G., & Zeze, A. (2011). Chromium tolerance and reduction potential of Staphylococci species isolated from a fly ash dumping site in South Africa. African Journal of Biotechnology, 10(69), 15587–15594.
  34. Lakshmanasenthil, S., Vinothkumar, T., Ajithkumar, T. T., Marudhupandi, T., Veettil, D. K., Ganeshamurthy, R., ... & Balasubramanian, T. (2013). Harmful metals concentration in sediments and fishes of biologically important estuary, Bay of Bengal. Journal Of Environmental Health Science & Engineering, 11(1), 33.
  35. Lane, D.J., Pace, B., Olsen, G.J., Stahl, D.A., Sogin, M.L., & Pace, N.R. (1985). Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proceedings of the National Academy of Sciences of the United States of America, 82(20), 6955–6959.
  36. Lane, D.J. (1991). 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds). Nucleic Acid Techniques in Bacterial Systematics. John Wiley & Sons: New York, NY, USA. pp 115–147. 
  37. Lloyd J.R., & Lovley D.R. (2001). Microbial detoxification of metals and radionuclides. Current opinion in biotechnology 12(3), 248– 253.
  38. Luli, G.W., Talnagi, J.W., Strohl, W.R., & Pfister, R.M., (1983). Hexavalent chromiumresistant bacteria isolated from river sediments. Applied and Environmental Microbiology. 46(4), 846-854.
  39. Mangaiyarkarasi, A., & Geetharamani, D. (2014). Bio absorption of chromium employing microorganism isolated from tannery effluent. Scrutiny International Research Journal of Biological and Environmental Science, 1(9).
  40. McDonald, M. J., Wang, W. C., Huang, H. Da, & Leu, J. Y. (2011). Clusters of nucleotide substitutions and insertion/deletion mutations are associated with repeat sequences. PLoS Biology, 9(6). e1000622
  41. Molina, T.L., Patel, R., Molina, D.D., Persans, M.W., & Lowe, K.L. (2011). Isolation of a naturally-occurring nickel resistance plasmid from a rare hypersaline estuary (Laguna Madre, Texas, USA) for potential use as a bio-indicator of metal contamination. World Journal of Microbiology and Biotechnology, 27(9), 2163–2171.
  42. Mollania, N., Mesbahi-Norozi, M., Novrozi-Nejad, Z., Mollania, H., & Khajeh, K. (2013). High ability of Bacillus cereus strain isolated from chromite mine in bioremediation of carcinogenic chromium-contaminated wastewater. Caspian Journal of Applied Sciences Research, 2(9), 10-12
  43. Narayani, M., & Shetty, K.V. (2013). Chromium-Resistant Bacteria and Their Environmental Condition for Hexavalent Chromium Removal: A Review. Critical Reviews In Environmental Science & Technology, 43(9), 955-1009.
  44. Naser, H.A. (2013). Assessment and management of heavy metal pollution in the marine environment of the Arabian Gulf: a review. Marine Pollution Bulletin, 72(1), 6-13.
  45. Nazeema, M., & Nirmala, T. (2017). Isolation and characterization of chromium ( VI ) - reducing bacteria from tannery effluents. LIFE: International Journal of Health and Life-Sciences, 3(1), 35–48.
  46. Nemeghaire, S., Argudín, M.A., Feßler, A.T., Hauschild, T., Schwarz, S., & Butaye, P. (2014). The ecological importance of the Staphylococcus sciuri species group as a reservoir for resistance and virulence genes. Veterinary Microbiology, 171(3–4), 342–356.
  47. Nielsen, S.L., K. Sand-Jensen, J. Borum, & O. Geertz-Hansen (2002). Phytoplankton, nutrients and trans- parency in Danish coastal waters. Estuaries 25:1025-1032.
  48. Palmer, C.D., & Puls, R.W. (1994). EPA Ground Water Issue. United States Environmental Protection Agency.
  49. Pimentel, B.E., Moreno-Sanchez, R., & Cervantes, C. (2002). Efflux of chromate by Pseudomonas aeruginosa cells expressing the ChrA protein. FEMS Microbiol Lett. 212, 249-54.
  50. Pinet, P.R. (2011). Invitation to Oceanography. Burlington, Massachussets. Jones & Bartlett Learning LLC
  51. Raicevic, V., Golic, Z., Lalevic, B., Jovanovic, L., Kikovic, D., & Mladenovic, S.A. (2013). Isolation of chromium resistant bacteria from a former bauxite mine area and their capacity for Cr(VI) reduction. African Journal of Biotechnology, 9(40), 6727– 6732.
  52. Rani, A., & Goel, R. (2009). Strategies for crop improvement in contaminated soils using metal-tolerant bioinoculants. In: Khan MS, Zaidi A, Musarrat J, (eds.) Microbial strategies for crop improvement, Springer, Berlin, 105–132.
  53. Robidillo, C.J.T., Villarante, N. R., & Trinidad, L.C. (2014). Biosorption of copper(II) by live biomasses of two indigenous bacteria isolated from copper-contaminated water. Philippine Science Letters, 7(2), 356–371.
  54. Sakurai, R., & Haung, P.M. (1995). Cadmium adsorption on the Hydroxy aluminum Montmorillonite complex as influenced by oxalate. In P.M. Huang, J. Berthelin, J.M. Bollag, W.B. McGill, A.L. Page (Eds.), Environment impact of soil component interactions: Vol.2, Metals, Other Inorganics and Microbial Activities. CRC Press/Lewis publishers, Boca Raton, FL., 39-46.
  55. Saranraj, P., & Sujitha, D. (2013). Microbial Bioremediation of Chromium in Tannery Effluent: A Review. International Journal of Microbiological Research, 4(3), 305- 320.
  56. Scientific Committee on Toxicity, Ecotoxicity and Environment (2002). Risks to Health from Chromium IV in Cement. 32th CSTEE Plenary Meeting.
  57. Silver, S., Schottel, J., & Weiss, A. (2001). Bacterial resistance to toxic metals determined by extrachromosomal R factors. International Biodeterioration and Biodegradation, 48(1–4), 263–281.
  58. Sy, C., Dangles, O., Borel, P., & Caris-veyrat, C. (2015). Interactions between carotenoids from marine bacteria and other micronutrients: impact on their stability and antioxidant activity. Marine Drugs, 13, 7020–7039.
  59. Szefer, P. (2002). Metals, metalloids and radionuclides in the Baltic Sea ecosystem. Elsevier, Amsterdam. Tabao, N.K.C., & Monsalud, R.G. (2010). Screening and optimization of cellulase production of Bacillusstrains isolated from Philippine mangroves. Philippine Journal of Systematic Biology, 4, 79–87.
  60. United States Environmental Protection Agency (2006). In situ and ex situ biodegradation technologies for remediation of contaminated sites. In United States Environmental Protection Agency. Retrieved September 29, 2016.
  61. United States Environmental Protection Agency (2015). Basic information about estuaries. In United States Environmental Protection Agency. Retrieved September 25, 2016.
  62. Upadhyay, N., Vishwakarma, K., Singh, J., Mishra, M., Kumar, V., Rani, R., … &Sharma, S. (2017). Tolerance and reduction of chromium (VI) by Bacillus sp. MNU16 isolated from contaminated coal mining soil. Frontiers in Plant Science, 8(May), 1–13.
  63. Vardhan, S., Yadav, A. K., Pandey, A. K., & Arora, D.K. (2013). Diversity analysis of biocontrol Bacillus isolated from rhizospheric soil of rice – wheat (Oryza sativa – Triticum aestivum L .) at India. The Journal of Antibiotics, 66(8), 485–490. 
  64. Wu, M., Song, L., Ren, J., Kan, J., & Qian, P.Y. (2004). Assessment of microbial dynamics in the pearl river estuary by 16S rRNA terminal restriction fragment analysis. Continental Shelf Research, 24(16), 1925–1934.
  65. Xu, F.L., K.C. Lam, Z.Y. Zhao, W. Zhan, Y.D. Chen, & S. Tao. (2004). Marine coastal ecosystem health assessment: A case study of the Tolo Harbour, Hong Kong, China. Ecological Modeling 173:355–270.