Considering the global challenge of achieving excellence in education, it is imperative that the Philippine Higher Education Institutions should align to the standards set by the accrediting bodies. The study aimed to determine the alignment of chartered SUCs IT program in the Caraga Region to CHED Policies and Standards. Employing mixed methods, the study considered three types of instruments: survey questionnaire, interview schedule, and observation/ocular visit checklist. The survey questionnaire and observation/ocular visit checklist, which was based on CMO no. 53, series 2006 for Information Technology Education Programs, were used. Data were subjected to statistical treatment as frequency, mean, standard deviation and Analysis of Variance (ANOVA). The results revealed that in terms of alignment percentage by geographical location, generally, the areas – curriculum outline, instructional standards, admission and residence requirements, garnered the highest alignment percentage of 100.00% in four geographical locations. The study, therefore, concludes that one geographical location is not significantly better than the other, or that one is not significantly more aligned than other geographical locations. It is recommended that chartered SUC administrations should continuously upgrade and update the school’s physical facilities and equipment in conformity to the CHED standards and other recognized accrediting agencies that require standardization to support the IT faculty in the delivery of instruction.